BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BA0AB024C12SP1|AL428199
(603 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1532 957 0.0
>3x_Contig1532
Length = 7463
Score = 957 bits (472), Expect = 0.0
Identities = 564/603 (93%), Gaps = 5/603 (0%)
Strand = Plus / Minus
Query: 1 aamgagaacgtattctcacttatctcaaatgagattcagcccggaagcagaatccgacat 60
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5989 aacgagaacgtattctcacttatctcaaatgagattcagcccggaagcagaatccgacat 5930
Query: 61 ggtgcgaaatatgcagggttatgtattagcttatggtaatctgccattgatctcagawtt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 5929 ggtgcgaaatatgcagggttatgtattagcttatggtaatctgccattgatctcagattt 5870
Query: 121 aagagagtgcatamccagcacaaaaagggaggtamacttgggaaataaatggatcacagg 180
||||||||||||| ||||||||| ||||| |||| |||||||||||||||||||||| ||
Sbjct: 5869 aagagagtgcatacccagcacaacaagggcggtacacttgggaaataaatggatcactgg 5810
Query: 181 attaacawaagacgacataggggaagaaacgrtatawggtatgamgggcgarrgggaatt 240
|| || |||||||||| |||||||||||| |||| ||||||| |||||| ||| |||
Sbjct: 5809 ttt--cataagacgacat-ggggaagaaacggtatatggtatgacgggcgagggggtatt 5753
Query: 241 raacgctaaatttaaagattttaggcaatggaaaaacaagwatartcaattgcatgatta 300
||||||||||||||||||||||||||||||||||||||| || ||||||||||||||
Sbjct: 5752 gaacgctaaatttaaagattttaggcaatggaaaaacaagtttagtcaattgcatgattt 5693
Query: 301 attccaacagtgcttgcaatccaaatataaaaagatgacawcagtatttacaacatctgt 360
||||| | ||||||||||||||||| |||||||||| || |||| ||||| ||||||||
Sbjct: 5692 attccttcggtgcttgcaatccaaat-taaaaagatgccatcagt-tttactacatctgt 5635
Query: 361 aaatacgttccacatggctcaaacgaagccaataagatgatatawtttgcattaaaagag 420
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
Sbjct: 5634 aaatacgttccacatggctcaaacgaagccaataagatgatattttttgcattaaaagtg 5575
Query: 421 aagawwcagcaggtaaatgctggcacagagaaagatgtgacaatatctttgctatgtgaa 480
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5574 aagattcagcaggtaaatgctggcacagagaaagatgtgacaatatctttgctatgtgaa 5515
Query: 481 ccaattacaagggagwwaagtcccatctctcctgaagaagcaaaggaacaattcttacaa 540
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5514 ccaattacaagggagttaagtcccatctctcctgaagaagcaaaggaacaattcttacaa 5455
Query: 541 gatctaaattccattttgaaacgtatagacgctaactctacggacmtagtcgttttggaa 600
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 5454 gatctaaattccattttgaaacgtatagacgctaactctacggacctagtcgttttggaa 5395
Query: 601 ggg 603
|||
Sbjct: 5394 ggg 5392
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.40 0.715 1.33
Gapped
Lambda K H
1.40 0.715 1.33
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3442
Number of Sequences: 1807
Number of extensions: 3442
Number of successful extensions: 75
Number of sequences better than 1.0e-20: 1
length of query: 603
length of database: 10,358,551
effective HSP length: 16
effective length of query: 587
effective length of database: 10,329,639
effective search space: 6063498093
effective search space used: 6063498093
T: 0
A: 40
X1: 5 (10.1 bits)
X2: 14 (28.4 bits)
S1: 12 (24.8 bits)
S2: 49 (99.8 bits)